Question: Problem with BEDTOBAM tool in Galaxy
gravatar for abhirup1992
4 months ago by
abhirup19920 wrote:

Dear all, I have a .bed file which I need to reanalyze and so I wanted to convert it into a .bam file by the tool BEDTOBAM tool in galaxy. However, everytime when I have tried to that, My job has got paused in between and galaxy keeps notifying me that my .bed files have entered an unstable state. I would appreciate any sort of advice regarding it. Thanks for your time.

galaxy bedtools chip-seq • 138 views
ADD COMMENTlink modified 4 months ago by Jennifer Hillman Jackson25k • written 4 months ago by abhirup19920
gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Do you mean this tool instead? BEDTools > BAM to BED converter

There isn't a tool to do the reverse that I am aware of. BED datasets do not include the required data for BAM format.

Where are you working? A bug report can be sent in if working at or can reproduce the problem there. In your case, if there is no error dataset, a share link to the history can be used instead of the bug icon. Please leave all inputs/outputs undeleted and include a link to this post for cross-reference.


Thanks! Jen, Galaxy team

ADD COMMENTlink written 4 months ago by Jennifer Hillman Jackson25k
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