Question: Bed To Gff
0
Robin Mjelle • 20 wrote:
Dear Galaxy
I have a problem converting Interval to GFF.
I used the tool
BED-to-
GFF<http: main.g2.bx.psu.edu="" tool_runner?tool_id="bed2gff1">converter.
My Interval file contains 18 coulmns:
*chr1 33308998 33309020 + cel-let-7-5p 0
chr1 33308999 255 22M * 0 0
AGAGGAAGAAGGAAGAAAAGAA UGAGGUAGUAGGUUGUAUAGUU XA:i:0 MD:Z:22
NM:i:0*
However my GFF output only contains 9, and it has removed the feature
"*
cel-let-7-5p":*
chr1 bed2gff region_0 33308999 33309020 0
+ . region_0;
Instead of region_0 I want the gene name, in this case the miRNA name.
How
do I do this?
Best Robin
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modified 6.7 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
6.7 years ago by
Robin Mjelle • 20
