Question: Converting File To Interval Or Bed In A Workflow
gravatar for Michael Wilson
8.7 years ago by
Michael Wilson10 wrote:
Dear Galaxy users/developers, I was wondering if anyone knows a way to take a tabular file (i.e. with four columns: chr start stop name) and convert it into a bed or interval file during a workflow (as opposed to doing it manually). I have a workflow which produces a four-column tabular file by extracting columns from an input file but I need it to be recognized as a bed or interval in order to then extract sequences in fasta format. There may be something obvious I am missing but I do not see any options in the Convert formats tools. Thanks in advance. Cheers, Mike
galaxy • 1.0k views
ADD COMMENTlink written 8.7 years ago by Michael Wilson10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour