Question: Converting File To Interval Or Bed In A Workflow
0
Michael Wilson • 10 wrote:
Dear Galaxy users/developers,
I was wondering if anyone knows a way to take a tabular file (i.e.
with four
columns: chr start stop name) and convert it into a bed or interval
file
during a workflow (as opposed to doing it manually). I have a workflow
which
produces a four-column tabular file by extracting columns from an
input file
but I need it to be recognized as a bed or interval in order to then
extract
sequences in fasta format. There may be something obvious I am missing
but I
do not see any options in the Convert formats tools. Thanks in
advance.
Cheers,
Mike