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Question: Reference genome not available on server -- Solution: use a Custom Reference Genome/Build
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gravatar for tahirbiochem
8 months ago by
tahirbiochem • 0
tahirbiochem • 0 wrote:

To process Chipseq data, the refernce genome is missing in Galaxy. What should be done in this case?
custom genome database index chip-seq • 217 views
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modified 8 months ago by Jennifer Hillman Jackson ♦ 25k • written 8 months ago by tahirbiochem • 0
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gravatar for Jennifer Hillman Jackson
8 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If your intended target genome is not available as an index for tools, a Custom reference genome can be uploaded and used. Be sure to format the fasta dataset correctly and that any annotation data used is based off of the exact same genome build.

This is how: https://galaxyproject.org/support/#getting-inputs-right

Thanks! Jen, Galaxy team
ADD COMMENT • link written 8 months ago by Jennifer Hillman Jackson ♦ 25k
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