Question: Reference genome not available on server -- Solution: use a Custom Reference Genome/Build
0
gravatar for tahirbiochem
8 months ago by
tahirbiochem0 wrote:

To process Chipseq data, the refernce genome is missing in Galaxy. What should be done in this case?

ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson25k • written 8 months ago by tahirbiochem0
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

If your intended target genome is not available as an index for tools, a Custom reference genome can be uploaded and used. Be sure to format the fasta dataset correctly and that any annotation data used is based off of the exact same genome build.

This is how: https://galaxyproject.org/support/#getting-inputs-right

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour