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• built-in genome for HISAT2 not available
  I am trying to map fastq to mm9 genome using HISAT2. But the drop-down list of built-in genomes i...
• type of file for reference genome
  i want to use a reference genome for tophat. Which type of file the galaxy will recognize?
• using an imported genome
  How do I format an imported genome fasta file so that I can use it as the database for BEDtools f...
• Genome build accession for Galaxy build-in genomes
  How can I find exact genome build (NCBI accession number, like GCA_000001405.17) for build-in gen...
• SnpEff supports only genomes of two species?
  Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list show...
• Pipeline annotate genome
  Hi  evreyone  i am  beginner in bioinforantique  i want to know what  is  the  Pipeline to use  f...
• Reference genome not available on server -- Solution: use a Custom Reference Genome/Build
  To process Chipseq data, the refernce genome is missing in Galaxy. What should be done in this c...
• HISAT2 reference genome unobtainable
  Trying to use HISAT2 - no reference genomes are available, how should I report this? Many thanks,...
• Galaxy for alignment for genomes of bacterial species
  Galaxy can be used for alignment for genomes of bacterial species or not?? How genome sequence ca...
• Use With Local Browser Mirror
  Hi all, Is it possible to customize Galaxy to use a mirror of the genome browser? Thanks, Keit...