Question: Adding Reference Genome
0
gravatar for Vijay Kumar
5.3 years ago by
Vijay Kumar • 20
Vijay Kumar • 20 wrote:
Dear sir, please add reference genome of Zebra finch genome in Bowtie2 and Tophat2 option in galaxy. thank u
alignment bowtie • 808 views
ADD COMMENT • link • modified 5.3 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.3 years ago by Vijay Kumar • 20
1
gravatar for Jennifer Hillman Jackson
5.3 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Vijay, For right now, using a Custom reference genome with these tools is the best solution: http://wiki.galaxyproject.org/Support#Custom_reference_genome This genome in Galaxy is sourced from UCSC, as you probably know: http://wiki.galaxyproject.org/Support#Reference_genomes The longer-term strategy for new/updated indexes will be worked out soon. Our immediate goal was to get the tools out on Main as soon as possible. Thanks, Jen Galaxy team -- Jennifer Hillman-Jackson http://galaxyproject.org
ADD COMMENT • link written 5.3 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour