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• Assembly of metatranscriptomic data with reference
  Hello. I have a set of reads produced by metatranscriptomic cDNA sequensing of the total RNA samp...
• TopHat analysis has been taking long time
  Hello, I started TopHat analysis on April 15th. Howevere, the job is still working (today is Apr...
• MNase ChIP-seq paired-end data analysis ?
  Hello everyone! Sorry for long explanation! I did paired-end ChIP-seq for my input and IP sample...
• Exome Anylisis By Galaxy
  Hello everyone, I am a new user of Galaxy. I have received the data from an exome of 4 samples. ...
• RNA-Seq analysis for 2 genes
  Hi, I did RNA-seq for 20 samples and I am interested in the differential expression of normal tra...
• Pipeline Design For Bacterial Rna-Seq
  Hi community, I have just discovered a wonderful Galaxy server for RNA-Seq analysis: Oqtans http...
• Analysing Pooled Data With Freebayes
  Hi, I am new to this and I hope someone can help. I have pooled sequencing data that I am trying...
• Chip-Seq Data
  Hi, I have illumina ChipSeq data in txt format with this structure: @HWI-EAS225:8:1:1:58#0/1 NAG...
• Help with Chip-Seq data analysis without input!
  Hi! I am new in galaxy and I am trying to analyse the sequences of a ChIP-Seq.I have been reading...
• Long wait time for Tophat
  I have a few RNAseq samples running TopHat for over 3 days now. I was wondering if you guys have ...
• Initial Qc And Grooming For Illumina Hiseq2000 Paired End Rnaseq Data
  I am trying to do RNAseq analysis on Paired end data from the Hiseq2000. I have about 50 files f...
• RIP-SEQ or RNA-SEQ
  Hello, I am new to galaxy as well as RNA seq analysis. Although, I did not perform RNA seq, I am...
• Sample grouping in Metagenomics Analysis in Galaxy
  I have 20 Fastq files from 16S rRNA Illumina run. I am trying to learn how to analyze these data...
• small RNA-seq data analysis
  Hello, I have a couple of questions. Do you have a pipeline for small RNA-seq data analysis? Also...
• Renaming sequencing files
  Hi, I am working on gut microbiome data and I am working on QIIME2. The data I receive is paired...
• How do I reorder files in history?
  Dear all, I have uploaded many raw data files for 10 samples (8 files per sample). However, uplo...
• Using web based platform for analysis
  Hi, I am new to the world of NGS bioinformatics. I am not very good with command based programs. ...
• comparisson of RNA-seq FPKMs across samples
  Dear BioStars community, I am trying to "recycle" some RNA-seq data published as supplementary m...
• Running MACS2 without a control sample
  While going through the [Analysis of Chip-Seq][1] data tutorial, I realized that one of my input ...
• How To Find Out Snps And Point Mutations In Rna-Seq Data Using Galaxy?
  HI, I am new to the RNA-seq, and the only available sources for me to do analysis is the Galaxy s...
• Can't map my pairend samples with TopHat after grooming.
  Hello everyone, I need to do TopHat my groomed data files, which are pair-ended. I groomed my ...
• Merge RNA-Seq files in CLC Genomics Workbench ?
  Hi I now analyzing my RNA-Seq data (illumina, 50bp paired end) using CLC Genomics Workbench to ve...