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Question: (Closed) Read counts for limited genome regions
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gravatar for cjain
9 months ago by
cjain • 10
cjain • 10 wrote:

Hello:

I would like to get raw reads depth at each genome position for a limited region of the chromosome. What would be the best tool to use and what is the correct format to limit the query region?

Thank you,

Chaitanya Jain University of MIami
featurecount bamtools htseq_count bedtools bigwig • 232 views
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modified 9 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by cjain • 10

Hello cjain!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: It sounds like you found the tools to do the analysis. More help is in the Galaxy tutorials: https://galaxyproject.org/learn/
ADD REPLY • link written 3 months ago by Jennifer Hillman Jackson ♦ 25k
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