Question: Snp Annotation
0
Oliver, Gavin • 20 wrote:
Hi,
I am new to Galaxy and am wondering what tools are available for
annotation of SNPs?
I know that snpEff is implemented in Galaxy and this enables
annotation
such as location and predicted effect, however I am wondering if there
are any automated means of annotating a polymorphism as known/novel or
determining its frequency in the population.
Does Galaxy offer anything like this or would it be necessary to
create
scripts that would for exampole compare to dbSNP for uniqueness and
the
1000 genomes project for frequency.
Best,
Gavin
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modified 7.6 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
7.6 years ago by
Oliver, Gavin • 20
