Question: Way to trim all NGS nucleotide sequences to a specific section
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c.l.frankling • 10 wrote:
Is there a way to trim the nucleotide sequence to a specific region? I know you can by base number but what if say for instance I would like to trim to just the open reading frame e.g.
TATAGAAGGGTAATACGACTCACTATAGGGAGTCGCTGCCATGGCCTTGAAAGCCCATCTCGTAACGCCATCATTGGGAGGAGGA
and I want to trim everything before the ATG off so that it becomes;
ATGGCCTTGAAAGCCCATCTCGTAACGCCATCATTGGGAGGAGGA
This will be a different base position in most of the sequences so I couldn't instance trim off position 1-40. Is there a tool where you can tell it trim all sequences to the region starting with ATGGCC??
Many thanks,
Charlotte Frankling.
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modified 12 months ago
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Jennifer Hillman Jackson ♦ 25k
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12 months ago by
c.l.frankling • 10
