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Question: How To Use Gatk Unified Genotyper With "A List Of Genomic Intervals Over Which To Operate" Option
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gravatar for Carlos Borroto
7.2 years ago by
Carlos Borroto • 390
Washington Metropolitan Area
Carlos Borroto • 390 wrote:
Hi, I would like to run "Unified Genotyper" on a region of a BAM file, I see the advance option "A list of genomic intervals over which to operate" exist and seems to be what I need. The problem is I only get a drop-down menu with the single option "Selection is optional", which I don't understand. Thanks, Carlos
• 1.2k views
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modified 7.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.2 years ago by Carlos Borroto • 390
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gravatar for Jennifer Hillman Jackson
7.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Carlos, This tool is still under development on the test Galaxy instance and not all features/functions are complete. This is one of them and there are a few others like it. Please be aware that there could potentially be other as yet uncovered issues with the tool. Just wanted to send a reminder. This is true for all tools on the Test server, even those that are published onto main could possibly be undergoing changes on test. Hopefully this helps to explain what is going on. If you do notice anything else that you think is wrong with the tool or its output (should you continue to test-drive it), we would be glad to have your feedback/comments. Take care, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENT • link written 7.2 years ago by Jennifer Hillman Jackson ♦ 25k
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