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• Fastq Splitter Empty And Fastq Manipulator Doesn'T Work
  I am having the same issue as this user: http://user.list.galaxyproject.org/FASTQ-splitter-produ...
• Splitting Biased Paired End FASTQ data
  The FASTQ splitter in Galaxy warns that the tool only works if Paired-end data has equal length r...
• (No Subject)
  I am new to the NGS analysis. I need help to solve this problem. As shown in my previous emial...
• Making paired-end reads the same length
  I have paired-end data (in two separate files).  I have groomed my files, and would like to filte...
• Tophat Paired End Read
  Hi all, I have paired end RNA-Seq reads ( Illumina Hiseq 2000) in seperate files. Before mapping...
• Regarding splitter or merging the paired end sequencing file
  hello, Recently i got paired end data and firstly, i removed the adopter sequences. For that i u...
• Any tools for separate unpaired reads in paired-end sequencing fastq files?
  Hi, I would like to know if there is any tool can do the following job? I have some data files ...
• Barcode Splitter On Paired End Illumina Reads
  Dear Galaxy team   I am so sorry for repeatedly posting the same question, but I do need some inp...
• Need Help To Split Paired-End Dataset
  I am new to the NGS analysis. I need help to solve this problem. As shown in my previous emial...
• Help with downloading files from EBI SRA
  I am new to galaxy and have been trying to figure out how to align RNA-seq reads to a genome in o...
• fastq splitter problem
  fastq splitter is not working on paired end read for some of my file and produce output file with...
• Separating (F and R) reads uploaded from NCBI SRA & mapping them using BWA-MEM
  Can someone explain to me the best way to prepare NCBI SRA data for subsequent mapping to a cust...
• What is the correct regular expression for replacing inconsistent sequence and quality identifiers?
  Hello, I am trying to analyze RNA-Sequence data. The SRA accession number for the file that I am...
• Galaxy-using trimmomatics with ChIP seq pair ended (only one file with both reads)
  I am trying to run Trimmomatics in Galaxy under "pair end (as collection)" for afastqsanger.gz ...
• How to split a merge piared data using ncbi SRA tools?
  can I split a merged paired end extract reads into two separate data (acc. to their ends) using n...
• Tool barcode splitter not recognizing inputs (PEAR-assembled reads)
  I ran an Illumina 2 x 250 PER on PCR amplicons and received the data demultiplexed by the Index o...
• Pre-Processing Of Illumina Rna-Seq Paired End Data
  Hello, I have Illumina 76bp paired end data for a zebrafish RNA-seq experiment and am basically ...
• Preprocessing Gdna Illumina Paired End Data For Mapping/Snp Calling
  This question is w/ regards to pre-processing whole genome resequencing data for mapping data to ...
• splitter not working
  hi everybody. i am very inexperienced in this area, so if you guys can kindly help me to solve my...
• Can I Convert Paired-End Datasets Into Single End Ones?
  Dear All, I have some paired-end datasets to be analyzed, but I am not sure about their Mean Inn...
• splitting paired end fastq reads on galaxy
  Hi, I'm new to galaxy. While working on a paired end data set, I noticed that there is only one f...
• Barcode Splitting
  I have lllumina sequences which are barcoded in the sequence identifier e.g.: @FCC186GACXX:6:11...