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Question: fastq splitter problem
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gravatar for kabirkhan78621
8 months ago by
kabirkhan78621 • 0
kabirkhan78621 • 0 wrote:

fastq splitter is not working on paired end read for some of my file and produce output file with nothing in it but it is working properly on another file? i want to use the file in tophat. also when i tired to use tophat with option paired end as collect it do not take the file even after running fastq groomer on the file therefore ever time i have to split the file. now what to do in this regard?

fastq splitter rna-seq • 388 views
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modified 8 months ago by Jennifer Hillman Jackson ♦ 25k • written 8 months ago by kabirkhan78621 • 0
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gravatar for Jennifer Hillman Jackson
8 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If you are still having this problem with the splitter tool, the fastq FAQs here should help sort out the formatting problem: https://galaxyproject.org/support/#getting-inputs-right

Should the issue remain and you can reproduce it at Galaxy Main https://usegalaxy.org, a bug report from the error dataset can be sent in. Make sure the inputs and outputs are undeleted and include a link to this Biostars post in the comments.

All support FAQs: https://galaxyproject.org/support/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 8 months ago by Jennifer Hillman Jackson ♦ 25k
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