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Question: PAR-CLIP data analysis
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gravatar for cjain
16 months ago by
cjain • 10
cjain • 10 wrote:

Hi:

Do you have a suggested pipeline for the analysis of PAR-CLIP data (cross-linking and immunoprecipitation of protein-bound RNAs that contain a photoactivable nucleotide)?

Thanks,

C. Jain
rna-seq clip-seq par-clip • 536 views
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modified 16 months ago by Jennifer Hillman Jackson ♦ 25k • written 16 months ago by cjain • 10
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gravatar for Jennifer Hillman Jackson
16 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The QBRC Public Galaxy server hosts publications, tools, and analysis guidance for CLIP-seq data analysis: https://galaxyproject.org/public-galaxy-servers/#qbrc-galaxy-and-pipe-clip

Thanks! Jen, Galaxy team
ADD COMMENT • link written 16 months ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for Bjoern Gruening
16 months ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

You might also want to look at the RNA-workbench which has several RNA related tools included: https://github.com/bgruening/galaxy-rna-workbench
ADD COMMENT • link written 16 months ago by Bjoern Gruening ♦ 5.1k
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