Question: PAR-CLIP data analysis
0
gravatar for cjain
9 days ago by
cjain0
cjain0 wrote:

Hi:

Do you have a suggested pipeline for the analysis of PAR-CLIP data (cross-linking and immunoprecipitation of protein-bound RNAs that contain a photoactivable nucleotide)?

Thanks,

C. Jain

rna-seq clip-seq • 50 views
ADD COMMENTlink modified 6 days ago by Bjoern Gruening4.6k • written 9 days ago by cjain0
0
gravatar for Jennifer Hillman Jackson
9 days ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

The QBRC Public Galaxy server hosts publications, tools, and analysis guidance for CLIP-seq data analysis: https://galaxyproject.org/public-galaxy-servers/#qbrc-galaxy-and-pipe-clip

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 days ago by Jennifer Hillman Jackson22k
0
gravatar for Bjoern Gruening
6 days ago by
Bjoern Gruening4.6k
Germany
Bjoern Gruening4.6k wrote:

You might also want to look at the RNA-workbench which has several RNA related tools included: https://github.com/bgruening/galaxy-rna-workbench

ADD COMMENTlink written 6 days ago by Bjoern Gruening4.6k
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