Question: Is it possible to specify the download folder to be on the server hosting the galaxy instance?
1
gravatar for Guy Reeves
28 days ago by
Guy Reeves850
Germany
Guy Reeves850 wrote:

Hi

I would like to know if it possible to for an administartor to specify (presumably in some config file) that when a user presses the download button, the file is not downloaded to the hard drive they are currently working on to a folder on the same server.

This would be really useful for our users. I know there are export options and wget commands but we find this unreliable with very large files- for reasons which are not clear to us. Cheers

Guy

ADD COMMENTlink modified 6 days ago • written 28 days ago by Guy Reeves850

Thanks .Yes a suppose a it would be a reverse FTP. Can I ask, when you select the' export history to file' where is the file actually generated? I think as files become bigger and bigger the users hard drive looks less and less attractive to download to.

Unfortunately tool development is beyond me .

Thanks

Guy

ADD REPLYlink written 27 days ago by Guy Reeves850

@Martin or anybody else who can point me in the right direction.

We are thinking about adapting this tool ‘bundle_collections’ but have no idea how to make a galaxy tool point outside itself. do you have any idea how we might do this? Thanks Guy

ADD REPLYlink written 21 days ago by Guy Reeves850
1

I would try asking the IUC at gitter.im/galaxy-iuc/iuc or their repo https://github.com/galaxyproject/tools-iuc/

Those are some of the best tool devs, they will know better than myself.

ADD REPLYlink written 21 days ago by Martin Čech ♦♦ 3.9k
1

Thanks I have posted a question to the great tool developers

https://github.com/galaxyproject/tools-iuc/issues/1295

ADD REPLYlink modified 19 days ago • written 19 days ago by Guy Reeves850

it was already being worked on

https://github.com/galaxyproject/galaxy/issues/2968

ADD REPLYlink modified 15 days ago • written 17 days ago by Guy Reeves850
1
gravatar for Martin Čech
28 days ago by
Martin Čech ♦♦ 3.9k
United States
Martin Čech ♦♦ 3.9k wrote:

Do you mean something like a reverse FTP/library import? I do not think we have such thing readily configurable.

You could write a custom Galaxy tool for this I think. (Or add this feature to Galaxy obviously.)

ADD COMMENTlink modified 28 days ago • written 28 days ago by Martin Čech ♦♦ 3.9k
0
gravatar for Guy Reeves
6 days ago by
Guy Reeves850
Germany
Guy Reeves850 wrote:

it could be that this tool is the answer

https://toolshed.g2.bx.psu.edu/view/earlhaminst/export_to_cluster/

came from this board

https://github.com/galaxyproject/tools-iuc/issues/1295

ADD COMMENTlink modified 6 days ago • written 6 days ago by Guy Reeves850
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