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Question: Include A Data Folder Into Galaxy
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gravatar for Norbert Grundmann
6.4 years ago by
Norbert Grundmann • 10
Norbert Grundmann • 10 wrote:
Hello, hopefully this is a simple question: How can I include a folder into the Galaxy server? The backgroud is, that I installed Galaxy on one of out server, which has access to the data folders used everywhere at our institute. So, instead of uploading and copying serveral big files (and waisting space on servers) I want to make a link to the appropiate folder, so it can be used like as the data has been uploaded. I hope I explained enough details... The question is: is it possible? Thanks for help, Norbert -- Institute of Bioinformatics Faculty of Medicine University of Muenster, Germany Use *BSD because Linux is a patch for Linux
galaxy • 1.1k views
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modified 6.4 years ago by Björn Grüning • 350 • written 6.4 years ago by Norbert Grundmann • 10
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gravatar for Björn Grüning
6.4 years ago by
Björn Grüning • 350
Björn Grüning • 350 wrote:
Hi Norbert, please have a look at the FTP-Upload feature from galaxy. The idea is that every user gets an FTP folder in which he can upload data. If you create such a directory you can probably link your data in such directories and galaxy will offer them to the users in the upload tool. Hope that helps. Cheers, Bjoern
ADD COMMENT • link written 6.4 years ago by Björn Grüning • 350
Hi, What I did was to create a directory with sub-directories for each user or data set. Then you can change the universe_wsgi_ini in line 375 and put your directory path there library_import_dir=your path Then as admin you can upload the files from the directory, actually you create a link to them and also change the accession permission to those files. Best, Luciano On Mon, Jun 25, 2012 at 1:49 AM, Björn Grüning < -- *Luciano Cosme* PhD Candidate Texas A&M Entomology Vector Biology Research Group www.lcosme.com 979 845 1885 cosme@tamu.edu
ADD REPLY • link written 6.4 years ago by Luciano Cosme • 220
In addition to FTP uploads for users, you may find the Data Library upload options useful: http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Libra ry%20Files --nate
ADD REPLY • link written 6.4 years ago by Nate Coraor ♦ 3.2k
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