Question: tool_id in job_conf.xml
gravatar for christophe.habib
2.7 years ago by
christophe.habib340 wrote:

Hello everyone,

I would like to fill the file job_conf.xml to use htcondor as scheduler. I know there is a possibility to specify the destination for specific tools in this file, for example :

    <tool id="bamtofastq" destination="local"/>
    <tool id="prinseq" destination="condor"/>

Here, I wonder what is the tool_id. When I look at the shed_tool_conf.xml I have for example :

<tool file="" guid="">

So there is an ID here, but in tool_conf.xml we have xml files specified, and the id is specified within them :

<tool id="comp1" name="Compare two Datasets" version="1.0.2">
  <description>to find common or distinct rows</description>

So, I wonder what is the tool_id that i should write in the job_conf.xml ... Do you have any guidance about how to do this properly ?

Thank you

htcondor tool_id job_conf.xml • 677 views
ADD COMMENTlink modified 2.7 years ago by Bjoern Gruening5.1k • written 2.7 years ago by christophe.habib340
gravatar for Bjoern Gruening
2.7 years ago by
Bjoern Gruening5.1k
Bjoern Gruening5.1k wrote:

Hans-Rudolf is correct, it is the ID of the tool xml file. But if you got your tool from the TS the ID also contains the toolshed the owner and the revision to make the ID really unique. So in your case it is

ADD COMMENTlink written 2.7 years ago by Bjoern Gruening5.1k
gravatar for Hotz, Hans-Rudolf
2.7 years ago by
Hotz, Hans-Rudolf1.8k wrote:

Hi Christophe

It is the id from the tool's xml

Regards, Hans-Rudolf

ADD COMMENTlink written 2.7 years ago by Hotz, Hans-Rudolf1.8k
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