Question: tool_id in job_conf.xml
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christophe.habib • 340 wrote:
Hello everyone,
I would like to fill the file job_conf.xml to use htcondor as scheduler. I know there is a possibility to specify the destination for specific tools in this file, for example :
<tools>
<tool id="bamtofastq" destination="local"/>
<tool id="prinseq" destination="condor"/>
</tools>
Here, I wonder what is the tool_id. When I look at the shed_tool_conf.xml I have for example :
<tool file="toolshed.g2.bx.psu.edu/repos/devteam/bwa/ca29c55c78e7/bwa/bwa-mem.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.4.1">
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>bwa</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>ca29c55c78e7</installed_changeset_revision>
<id>toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.4.1</id>
<version>0.4.1</version>
</tool>
So there is an ID here, but in tool_conf.xml we have xml files specified, and the id is specified within them :
<tool id="comp1" name="Compare two Datasets" version="1.0.2">
<description>to find common or distinct rows</description>
So, I wonder what is the tool_id that i should write in the job_conf.xml ... Do you have any guidance about how to do this properly ?
Thank you
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modified 2.7 years ago
by
Bjoern Gruening ♦ 5.1k
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written
2.7 years ago by
christophe.habib • 340
