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Question: Galaxy -- use of MinION data to convert FastQ to FastA
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gravatar for mdfinton
19 months ago by
mdfinton • 0
mdfinton • 0 wrote:

Hello, I have FastQ data from the MinION and I am having troubles converting these FastQ files to FastA files with the se of Galaxy. I was wondering if I am doing something wrong or if these files aren't yet compatable with Galaxy?
galaxy • 814 views
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modified 19 months ago by rmill117 • 10 • written 19 months ago by mdfinton • 0

What specific trouble are you experiencing? Are these fastq datasets in fastqsanger format?

ADD REPLY • link written 19 months ago by Martin Čech ♦♦ 4.9k

Could you solve this? I have the same problem

ADD REPLY • link written 12 months ago by clara_theaux • 0

Have you checked the answer below?

ADD REPLY • link written 12 months ago by Martin Čech ♦♦ 4.9k
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gravatar for rmill117
19 months ago by
rmill117 • 10
rmill117 • 10 wrote:

Are you sure you have a fastq file? The MinIon generates fast5 files which need to be converted to fastq files first. You can use poretools or poRe.

ADD COMMENT • link written 19 months ago by rmill117 • 10
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