Question: uploading fastq in galaxy
gravatar for mabitu0
3.2 years ago by
European Union
mabitu00 wrote:

sorry guys,

i am in ribo-galaxy now,i created account get data part no option to upload a fastq file to but there is illuminafastq option not fastq option instead, then i dont know how to upload fastq files from my computer for pre-processing such as adapter trimming...i can load sra files there but also no option to convert sra to fastq...then how i can start my analysis please?

ribo-galaxy sra fastq trimming • 1.3k views
ADD COMMENTlink modified 3.2 years ago by Jennifer Hillman Jackson25k • written 3.2 years ago by mabitu00
gravatar for Jennifer Hillman Jackson
3.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:


It is not clear if "fastq" or "fastqsanger" format is required by the tools on this particular server (this is not mentioned on the tool forms or in their help, or I didn't find it from a quick search). Ask in their forum for the most current information. Most Galaxy tools require fastqsanger.

Once that is determined, upload to server either using auto-detect for datatype assignment (this will result in ".fastq") or specify ".fastqsanger". Make sure that the data really is in fastqsanger format if you assign this.

Dataset format can be reviewed and adjusted (if needed) using the tools at This is how:

Hopefully this helps! Jen, Galaxy team

ADD COMMENTlink written 3.2 years ago by Jennifer Hillman Jackson25k
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