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Question: increase data quota - temporarily?
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gravatar for jgrant
3.8 years ago by
jgrant • 0
United States
jgrant • 0 wrote:

I have a large dataset - the fastq is about 87 GB.  I would like to run Galaxy/RepeatExplorer on it, but if I upload it I am told I have exceeded my storage quota.  Would it be possible to increase the limit for me, temporarily, while I run this analysis?  I imagine it will be smaller once I groom and quality trim the data, and convert to fasta.

Thanks!

Jessica
galaxy • 903 views
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modified 3.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.8 years ago by jgrant • 0
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gravatar for Jennifer Hillman Jackson
3.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Where are you running Galaxy? Also, I am not sure which tool you are using.

For the public Main Galaxy instance at http://usegalaxy.org, the quota per-dataset is 50 GB and per-account is 250 GB. 

Just a guess, but with common repeat finder tools, you could probably break up the dataset into a few smaller datasets, execute the job on each, then merge the results at the end. When searching known repeats against a sequence datasets, these tend to work sequence-by-sequence, not on datasets as a whole. But that may not be true for the tool you are using, so double check the logic to make sure this is a viable alternative. 

Another option is to move to a local or cloud Galaxy. Given the size of the data, unless you have a very large server and administrative support (or can do the set-up yourself), a cloud Galaxy is a better choice. 
http://wiki.galaxyproject.org/BigPicture/Choices

Hopefully this helps, Jen, Galaxy team

 
ADD COMMENT • link written 3.8 years ago by Jennifer Hillman Jackson ♦ 25k
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