Question: Galaxy -- use of MinION data to convert FastQ to FastA
gravatar for mdfinton
6 months ago by
mdfinton0 wrote:

Hello, I have FastQ data from the MinION and I am having troubles converting these FastQ files to FastA files with the se of Galaxy. I was wondering if I am doing something wrong or if these files aren't yet compatable with Galaxy?

galaxy • 245 views
ADD COMMENTlink modified 5 months ago by rmill1170 • written 6 months ago by mdfinton0

What specific trouble are you experiencing? Are these fastq datasets in fastqsanger format?

ADD REPLYlink written 6 months ago by Martin Čech ♦♦ 4.1k
gravatar for rmill117
5 months ago by
rmill1170 wrote:

Are you sure you have a fastq file? The MinIon generates fast5 files which need to be converted to fastq files first. You can use poretools or poRe.

ADD COMMENTlink written 5 months ago by rmill1170
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