Waiting job doesn't run

Question: Waiting job doesn't run

19 months ago by

Hi all! I started a workflow a couple of days ago after some trials I've done last weeks which took nearly a night to complete.

This time with the same dataset and steps the workflow works until trinity then it stops, I mean the status is 'waiting to run' but in the end it doesn't seem to proceed further.

Anyone knows the reason why? Maintenance maybe?

Thank you!

trinity workflow • 579 views

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modified 19 months ago by Jennifer Hillman Jackson ♦ 25k • written 19 months ago by luca.marisaldi • 30

19 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The public Main Galaxy server is undergoing many changes at this time and the clusters are busy processing jobs from all users. The combination may lead to slightly longer delays.

Allow queued jobs to stay queued. If any do not start to execute within 24 hrs, please let us know and we can follow up from there.

Thanks, Jen, Galaxy team

ADD COMMENT • link written 19 months ago by Jennifer Hillman Jackson ♦ 25k

Hello,

An issue between the server running Trinity jobs and Galaxy Main has been corrected. Your assembly job should start up now.

Thanks for reporting the problem! Jen, Galaxy team

ADD REPLY • link written 19 months ago by Jennifer Hillman Jackson ♦ 25k

Hi Jennifer! First of all thank you for your help!

However it's a pity to report that even after this correction there must be something wrong occurring again.

The assembly job did not start after your reply and even if I kept it queued during the whole Easter weekend (from Friday until today) today is still 'waiting'. (I also tried to restart the workflow, all the steps completed successfully but at the Trinity step the job stopped)

I am sure about the correctness of the assembling/dataset/workflow as it has been running for many samples during the last weeks with no problems.

Hope my report might help again and that this issue is going to be fixed soon! ;)

Have a good day!

Luca

ADD REPLY • link written 19 months ago by luca.marisaldi • 30

19 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Update:

Trinity was corrected again mid-day Friday 4/28/17 EST. Please re-run any jobs that failed.

If you have jobs that were started after that time, those will also need to be re-run (and the original grey jobs deleted/purged).

Sorry for the inconvenience, Jen, Galaxy team

ADD COMMENT • link written 19 months ago by Jennifer Hillman Jackson ♦ 25k

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