I have strange issue with Pear on my local Galaxy comparing to Main Galaxy:
I have pair ends - R1 and R2
On my local Galaxy - PEAR (Galaxy Version 0.9.6.1) do not see the files and I have to parse them with FASTQ Groomer - than I got 1% merged, but I know all can be merged.
On Main Galaxy - PEAR (Galaxy Version 0.9.6.0) see the files without grooming them, and with same options they are merged as it should be.
So something is wrong on my local Galaxy?