Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Problem with PEAR
0
gravatar for vebaev
22 months ago by
vebaev • 130
vebaev • 130 wrote:

I have strange issue with Pear on my local Galaxy comparing to Main Galaxy:

I have pair ends - R1 and R2

  • On my local Galaxy - PEAR (Galaxy Version 0.9.6.1) do not see the files and I have to parse them with FASTQ Groomer - than I got 1% merged, but I know all can be merged.

  • On Main Galaxy - PEAR (Galaxy Version 0.9.6.0) see the files without grooming them, and with same options they are merged as it should be.

So something is wrong on my local Galaxy?

error version galaxy local pear • 552 views
ADD COMMENT • link •
modified 22 months ago by Jennifer Hillman Jackson ♦ 25k • written 22 months ago by vebaev • 130
1

Turns out version Galaxy Version 0.9.6.0 works correctly as in the Main, so I uninstalled Version 0.9.6.1

ADD REPLY • link written 22 months ago by vebaev • 130
0
gravatar for Jennifer Hillman Jackson
22 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This behavior is worth reporting to the IUC (tool authors). Submit as an issue against this repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pear

Include details about tool versions and your local Galaxy version/mods (do you use Conda?) to help with troubleshooting plus you can link in this Biostars question for context.

Glad you have a solution meanwhile! Jen, Galaxy team
ADD COMMENT • link written 22 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour