Question: Problem with PEAR
0
gravatar for vebaev
10 months ago by
vebaev130
Bulgaria
vebaev130 wrote:

I have strange issue with Pear on my local Galaxy comparing to Main Galaxy:

I have pair ends - R1 and R2

  • On my local Galaxy - PEAR (Galaxy Version 0.9.6.1) do not see the files and I have to parse them with FASTQ Groomer - than I got 1% merged, but I know all can be merged.

  • On Main Galaxy - PEAR (Galaxy Version 0.9.6.0) see the files without grooming them, and with same options they are merged as it should be.

So something is wrong on my local Galaxy?

error version galaxy local pear • 273 views
ADD COMMENTlink modified 10 months ago by Jennifer Hillman Jackson23k • written 10 months ago by vebaev130
1

Turns out version Galaxy Version 0.9.6.0 works correctly as in the Main, so I uninstalled Version 0.9.6.1

ADD REPLYlink written 10 months ago by vebaev130
0
gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

This behavior is worth reporting to the IUC (tool authors). Submit as an issue against this repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pear

Include details about tool versions and your local Galaxy version/mods (do you use Conda?) to help with troubleshooting plus you can link in this Biostars question for context.

Glad you have a solution meanwhile! Jen, Galaxy team

ADD COMMENTlink written 10 months ago by Jennifer Hillman Jackson23k
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