Question: Problem with PEAR
0
gravatar for vebaev
15 months ago by
vebaev130
vebaev130 wrote:

I have strange issue with Pear on my local Galaxy comparing to Main Galaxy:

I have pair ends - R1 and R2

  • On my local Galaxy - PEAR (Galaxy Version 0.9.6.1) do not see the files and I have to parse them with FASTQ Groomer - than I got 1% merged, but I know all can be merged.

  • On Main Galaxy - PEAR (Galaxy Version 0.9.6.0) see the files without grooming them, and with same options they are merged as it should be.

So something is wrong on my local Galaxy?

error version galaxy local pear • 391 views
ADD COMMENTlink modified 15 months ago by Jennifer Hillman Jackson25k • written 15 months ago by vebaev130
1

Turns out version Galaxy Version 0.9.6.0 works correctly as in the Main, so I uninstalled Version 0.9.6.1

ADD REPLYlink written 15 months ago by vebaev130
0
gravatar for Jennifer Hillman Jackson
15 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This behavior is worth reporting to the IUC (tool authors). Submit as an issue against this repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pear

Include details about tool versions and your local Galaxy version/mods (do you use Conda?) to help with troubleshooting plus you can link in this Biostars question for context.

Glad you have a solution meanwhile! Jen, Galaxy team

ADD COMMENTlink written 15 months ago by Jennifer Hillman Jackson25k
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