Question: Assembly of Shotgun metagenome sequence data
0
gravatar for avmang
22 months ago by
avmang0
avmang0 wrote:

Hello, I want to assemble Shotgun metagenome data for uploading in IMG. IMG now accept only assemble data. Let me know the way for assembly of shotgun data Help me

assembly • 754 views
ADD COMMENTlink modified 22 months ago by Jennifer Hillman Jackson25k • written 22 months ago by avmang0
0
gravatar for Jennifer Hillman Jackson
22 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The GVL has a good assembly tutorial. Please see: https://www.genome.edu.au/learn/

You might also review the IMG new guidelines and/or contact them for suggestions so that the output you end up with is what their tools are expecting as input.

Assembly tools already wrapped for Galaxy can be found in the Tool Shed. Many are for use in a local or cloud Galaxy. If your target tool(s) are not wrapped yet, in all likelihood they could be.

Thanks, Jen, Galaxy team

ADD COMMENTlink modified 22 months ago • written 22 months ago by Jennifer Hillman Jackson25k
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