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• gene Id to gene name
  I did DEseq2 on galaxy for my samples after STAR alignment. I got the report and found the first...
• RNA-seq : problem with gene ID
  Hi all, It's the first time for me on galaxy and I have some problem. After the Deseq2 analyse...
• finding gene locations and known SNPs for a list of genes
  I have a list of genes for which I need to find their respective location on the chromosome and a...
• MLSA analysis concatenate genes
  Hi. I doing MSLA analysis and help with concatenation of genes. I am using MEGA 7. please assist
• An application that retrieves the read mapping results of a specific gene
  Hi guys May I know where can i reference more about writing an application that is able to retri...
• how to get gene name in varinat anlysis results
  hellow sir/ madum i got vcf file ofter running freebayes ,i got position of the gene actully i ne...
• GC and Rik genes
  Hello, I ran an RNA-Seq analysis using Cufflinks. After finishing the analysis I got a long list...
• converty cuff id to gene id
  Hi, wondering if anyone could give me some clues how to convert cuff gene id to normal gene id so...
• significant genes not shown in the scatter and volcano plots
  hello, When i plot the scatter plot and volcano plot for my cuffdiff output using cummeRbund it s...
• gene names and gene ids
  hi i have a annotate file of vcf using vcf annotate and in my out i dont have any gene ids thier...
• deepTools computeMatrix sorted values WITH gene identifiers
  I've performed a computeMatrix analysis on a ChIP-seq sample referenced to gene TSSs. This genera...
• Gene name annotation
  Hi, I've done cufflink-> cuff merge-> cuffdiff finally, I used reference annotation huma...
• Coding And Non Coding Exons
  Hi, I am very new to the UCSC browser, I want to find the number of coding and non coding exons ...
• Cuffdiff output redundant genes
  Hello, I am using the Galaxy tool Cuffdiff to analyze the RNA-seq data. But for the output file "...
• Batch conversion of ID to gene symbol
  I'm an old school molecular biologist who studies gene expression but is quite new to bio-computi...
• Problem With Repeated Genes In Cuffdiff'S Output
  Hi all, I am working on RNA-seq using TopHat/Cufflink/Cuffdiff for differential gene expression a...
• cuff diff output
  HI, I want to use the gene differential expression output from cuffdiff for performing gene onto...
• Genomic Coordinates To Enterz Gene Ids
  I have a list of around 3000 genomic coordinates of mouse genome and I would iike to extract gene...
• Enrichment analysis and Fisher's exact test
  I have a gene list and a table file with GO terms.  How can I make the gene list be used in the e...
• Hidata
  After running Cuffdiff, I got more than 95% of genes with HIDATA status. What should I do?
• fasta sequence from differential expressed gene
  Hi, I am Galaxy user. How could I get fasta sequences of differential expressed genes from Galaxy...
• How To Transfer Gene Id Into Protein Id
  Hi, I have some refseq gene id, like NM_*****. How can I transfer these gene id into protein id...