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• Nucleotide Analysis - Gc Percentage
  Hi all, Are there any built in Galaxy tools that I have missed to do with GC percentage (or inde...
• FASTQC for RNAseq
  i'm new to this RNAseq data analysis and im a learner. i took the RNA-seq of dengue virus when i...
• MLSA analysis concatenate genes
  Hi. I doing MSLA analysis and help with concatenation of genes. I am using MEGA 7. please assist
• Inquiry On Fastqc Report
  Dear Galaxy Officer, Good day. I am a new user of Galaxy main server. The tools provided are ve...
• Could You Please Add Vibrio Cholerae O1 Biovar Eltor Str. N16961 To The Reference Genome？
  Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq AccessionchrI 296114947....
• Is There Any Way To Calculate % At Or Gc Of A Group Of Sequences?
  I am looking at a file of peaks from ChIP-chip data and would like to know whether there is a way...
• Enrichment analysis and Fisher's exact test
  I have a gene list and a table file with GO terms.  How can I make the gene list be used in the e...
• RNAseq data to be processed in two ways: (i) mapping to de novo Trinity-based transcriptome and (ii) mapping a relatively new genome
  Hello all, I am new to RNAseq data and learning this process step by step, so I have a few quest...
• Ensembl numbers to gene symbols
  Hello, I performed RNA Seq analysis using DeSeq2. At the end of the analysis it got differential...
• about compute and correct GC bias
  Hello I am having a trouble running the compute GC bias on a BAM file aligned by BWA-MEM. The err...
• Compute and correct GC bias
  Hello I am having a trouble running the compute GC bias on a BAM file aligned by BWA-MEM. The err...
• Clustal alignments for ref_seq genes across specific mammals
  Hello I'm trying to do a gene-by-gene phylogenetic analysis between several mammalian species. T...
• Isochore As Genome Coordinates ?
  Hi, In my account I have uploaded a file name iso_mm10.bed. The bed files contains coordinates o...
• How Much Fpkm Can Be Take Into Consideration When Compare Gene Expression
  Dear All, I am comparing the gene expression between two cell types by examining the Cufflink ou...
• How To Do An Go Enrichment Analysis In Galaxy?
  Hi everyone, I got a list of differentially expressed genes from my RNA-seq data. Is there a t...
• trinity statistical analysis
  Hi I am new trinity user at usegalaxy. I used trinity to assemble my NGS data and received fasta ...
• Batch conversion of ID to gene symbol
  I'm an old school molecular biologist who studies gene expression but is quite new to bio-computi...
• deepTools computeMatrix sorted values WITH gene identifiers
  I've performed a computeMatrix analysis on a ChIP-seq sample referenced to gene TSSs. This genera...
• Upload at usegalaxy.org producing Internal Server Error (500) directly or failing FTP transfer quota exceed. Service depot.galaxyproject.org also impacted. RESOLVED
  Is there a problem with the connection between FileZilla and galaxy? I ask because fastq.gz files...
• Rank Terms as part of Genome Diversity
  Dear Jen, I have a gene list and a table file with GO terms.  How can I make the gene list be us...
• assessment tool for "Per sequence GC content" and "Sequence Duplication Levels"
  Hi About analysing RNA-Seq data I awared that "Per sequence GC content" and "Sequence Duplicatio...
• cuffdiff output to gene enrichment analysis
  Hi all, I successfully ran my RNA-seq data through the entire tuxedo suite on galaxy. I would li...