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Question: RNA-seq : problem with gene ID
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gravatar for apcherchloe
7 weeks ago by
apcherchloe • 0
apcherchloe • 0 wrote:

Hi all, It's the first time for me on galaxy and I have some problem.

After the Deseq2 analyses, I have an excel tab with many genes. I try to choose some gene that have a big fold change with a good p-value.

But then I can't identify my gene. I have this kind of gene ID :

440823
9145
55964
23544

How convert this gene ID to identify them on gene ontology?

Thanks, Chloé !

gene convert name deseq2 rna-seq • 86 views
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modified 7 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 7 weeks ago by apcherchloe • 0
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gravatar for Jennifer Hillman Jackson
7 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi,

These are Entrez gene identifiers.

To capture the associated GO assignments, use the tool: annotateMyIDs annotate a generic set of identifiers (Galaxy Version 3.5.0.1)

To convert to other gene identifier formats, use the tool: UniProt ID mapping and retrieval

Thanks! Jen, Galaxy team
ADD COMMENT • link written 7 weeks ago by Jennifer Hillman Jackson ♦ 25k
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