Question: Gene name annotation
gravatar for ghjung76
2.2 years ago by
ghjung760 wrote:


I've done cufflink-> cuff merge-> cuffdiff finally, I used reference annotation human hg38 as reference gene, but I couldn't see the gene name in the file. have gene id which actually work to validate assembly in IGV though, I have a problem to get the gene name.

can you help to figure out?

Thanks, Gina

assembly cufflinks rna-seq • 772 views
ADD COMMENTlink modified 2.2 years ago by Jennifer Hillman Jackson25k • written 2.2 years ago by ghjung760
gravatar for Jennifer Hillman Jackson
2.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:


The reference GTF file must contain the attribute gene_name for this data to be promoted into the output files. iGenomes is one source of reference annotation that contains this attribute:

This prior Q&A has more details, and when viewed, even more prior Q&A will appear in the right side bar.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.2 years ago by Jennifer Hillman Jackson25k
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