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Question: significant genes not shown in the scatter and volcano plots
1
gravatar for brarp0619
2.6 years ago by
brarp0619 • 10
brarp0619 • 10 wrote:

hello, When i plot the scatter plot and volcano plot for my cuffdiff output using cummeRbund it shows only the non significant genes (black dots) and does not show the significant genes. there are significant genes in the cuffdiff output. what could be the problem?

rna-seq • 1.1k views
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modified 18 months ago by akilabioinfo • 0 • written 2.6 years ago by brarp0619 • 10

Thanks for sending in the bug report with the details. More feedback shortly.

ADD REPLY • link written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for akilabioinfo
18 months ago by
akilabioinfo • 0
akilabioinfo • 0 wrote:

Hi,

Even i am having similar problem like this. In valcano plot it shows only non significant genes. There are ~200 genes significant in the cuffdiff output...Please help me..
ADD COMMENT • link written 18 months ago by akilabioinfo • 0
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