Question: significant genes not shown in the scatter and volcano plots
1
gravatar for brarp0619
2.6 years ago by
brarp061910
brarp061910 wrote:

hello, When i plot the scatter plot and volcano plot for my cuffdiff output using cummeRbund it shows only the non significant genes (black dots) and does not show the significant genes. there are significant genes in the cuffdiff output. what could be the problem?

rna-seq • 1.1k views
ADD COMMENTlink modified 18 months ago by akilabioinfo0 • written 2.6 years ago by brarp061910

Thanks for sending in the bug report with the details. More feedback shortly.

ADD REPLYlink written 2.6 years ago by Jennifer Hillman Jackson25k
0
gravatar for akilabioinfo
18 months ago by
akilabioinfo0 wrote:

Hi,

Even i am having similar problem like this. In valcano plot it shows only non significant genes. There are ~200 genes significant in the cuffdiff output...Please help me..
ADD COMMENTlink written 18 months ago by akilabioinfo0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour