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Question: Genomes no longer available after database migration
2
gravatar for onspotproductions
2.2 years ago by
onspotproductions • 40
United States
onspotproductions • 40 wrote:

I recently moved out production galaxy from one postgres database to another. In the process I can no longer access the custom genomes added in our tophat .loc file. I attmepted to reload the file using local data however it is not seeing the genome indices.
admin genome galaxy database index • 659 views
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modified 2.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.2 years ago by onspotproductions • 40
1
gravatar for Jennifer Hillman Jackson
2.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

It could be that not all of the files associated with genome indexes were migrated to the new database. Or, that the file paths within the files are no longer valid for the new database location. Check those two items first if this is still an issue.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.2 years ago by Jennifer Hillman Jackson ♦ 25k

When I migrated the galaxy it appears to have changed the location of the .loc files which identify the genomes. They were no longer in tool-data, but had moved to another location. I modified those and was able to add the genomes.

ADD REPLY • link written 2.2 years ago by onspotproductions • 40
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