Question: RNASEQ analysis on genome not in database
2.3 years ago by
rehe • 0
rehe • 0 wrote:
I need to do RNA seq analysis on viral genome that is not in database. Have mapped with Bowtie to the viral genome, but since there is no reference transcript to map to, how should i proceed.
ADD COMMENT • link •modified 2.3 years ago by Martin Čech ♦♦ 4.9k • written 2.3 years ago by rehe • 0
Is there an annotation of some sort for the viral genome? What sort of analysis are you trying to perform on the data?