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Question: Viewing BAM files on UCSC genome browser
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gravatar for bryantl
21 months ago by
bryantl • 90
United States
bryantl • 90 wrote:

I typically view BAM files on the UCSC genome browser to double check coverage of genes that I am particularly interested in. I noticed today that the option has disappeared and the files that I had already loaded as custom tracks in UCSC genome browser are no longer able to be viewed. Does anyone know what happened and if that feature will be restored?

bam • 1.1k views
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modified 21 months ago by Jennifer Hillman Jackson ♦ 25k • written 21 months ago by bryantl • 90

This just occurred server side at http://usegalaxy.org and a correction is in progress. Thanks for reporting the problem! Jen, Galaxy team

ADD REPLY • link written 21 months ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for Jennifer Hillman Jackson
21 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The link out to the UCSC Main genome browser within datasets is now present and active again.

Thanks, Jen, Galaxy
ADD COMMENT • link written 21 months ago by Jennifer Hillman Jackson ♦ 25k

Hello,

The UCSC genome browser option for my HISAT bam outputs are not available in my Galaxy history. Does anyone know when this will be restored? Thanks!

ADD REPLY • link written 3 months ago by Ray_Enke • 0
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