Question: Viewing BAM files on UCSC genome browser
gravatar for bryantl
21 months ago by
United States
bryantl90 wrote:

I typically view BAM files on the UCSC genome browser to double check coverage of genes that I am particularly interested in. I noticed today that the option has disappeared and the files that I had already loaded as custom tracks in UCSC genome browser are no longer able to be viewed. Does anyone know what happened and if that feature will be restored?

bam • 1.1k views
ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson25k • written 21 months ago by bryantl90

This just occurred server side at and a correction is in progress. Thanks for reporting the problem! Jen, Galaxy team

ADD REPLYlink written 21 months ago by Jennifer Hillman Jackson25k
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson25k wrote:


The link out to the UCSC Main genome browser within datasets is now present and active again.

Thanks, Jen, Galaxy

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson25k


The UCSC genome browser option for my HISAT bam outputs are not available in my Galaxy history. Does anyone know when this will be restored? Thanks!

ADD REPLYlink written 3 months ago by Ray_Enke0
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