Question: Genomes no longer available after database migration
2
gravatar for onspotproductions
2.1 years ago by
United States
onspotproductions40 wrote:

I recently moved out production galaxy from one postgres database to another. In the process I can no longer access the custom genomes added in our tophat .loc file. I attmepted to reload the file using local data however it is not seeing the genome indices.

admin genome galaxy database index • 600 views
ADD COMMENTlink modified 2.1 years ago by Jennifer Hillman Jackson25k • written 2.1 years ago by onspotproductions40
1
gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

It could be that not all of the files associated with genome indexes were migrated to the new database. Or, that the file paths within the files are no longer valid for the new database location. Check those two items first if this is still an issue.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.1 years ago by Jennifer Hillman Jackson25k

When I migrated the galaxy it appears to have changed the location of the .loc files which identify the genomes. They were no longer in tool-data, but had moved to another location. I modified those and was able to add the genomes.

ADD REPLYlink written 2.1 years ago by onspotproductions40
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