Question: Errors Trying to Fetch Reference Genome
gravatar for qspencer
2.6 years ago by
United States
qspencer0 wrote:

I am running Galaxy in AWS. I followed the instructions here to install it. I am trying to fetch a reference genome that I copied to the system Galaxy is running on. It says "fetching" next to "Reference Genome" on the admin page for "Local data" but it never seems to finish. When I looked at the log for the "Galaxy" service in the Cloudman admin page I see lots of errors like this:

error: [Errno 32] Broken pipe
---------------------------------------- - - [10/May/2016:16:04:00 +0000] "GET / HTTP/1.1" 200 - "-" "Python-urllib/2.7"
Exception happened during processing of request from ('', 36143)
Traceback (most recent call last):
  File "/mnt/galaxy/galaxy-app/eggs/Paste-", line 1068, in process_request_in_thread

Any thoughts on what the problem might be would be appreciated.

software error • 682 views
ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by qspencer0
gravatar for Enis Afgan
2.6 years ago by
Enis Afgan690
United States
Enis Afgan690 wrote:

Adding a new genome via a Galaxy Data Manager will create a new history and the process can be monitored there. If there's an error, it will show up under a corresponding history dataset.

BTW, the Broken pipe errors you are seeing are unrelated and do no affect the functionality of the Data Managers (or Galaxy).

ADD COMMENTlink written 2.6 years ago by Enis Afgan690
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