Question: Installing Galaxy On Arm Architecture
0
gravatar for Shun Liang
5.8 years ago by
Shun Liang • 40
Shun Liang • 40 wrote:
Hi, I am trying to install Galaxy on an ARMV7 architecture Linux server. I ran "run.sh" and failed because some of the python eggs could not be fetched. I then have a look at "http://eggs.galaxyproject.org/" and I have realized there aren't any armv7 builds for those eggs. I then decided to build (or scramble) the eggs on my own. I ran "scripts/scramble.py" and this also failed with the following message (after building a lot of things): scramble(): Copied egg to: /nfs/users/galaxy_dist/eggs/twill-0.9-py2.7.egg Traceback (most recent call last): File "scripts/scramble.py", line 26, in <module> eggs = c.scramble() File "/nfs/users/galaxy_dist/lib/galaxy/eggs/scramble.py", line 242, in scramble raise last_exc # only 1 failure out of the crate, be more informative galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for bx_python 0.7.1 May I ask what may cause this problem? Have I done anything wrong? Or, is it even possible to install Galaxy on ARM architecture Linux? Many thanks, Shun
galaxy • 1.1k views
ADD COMMENT • link • modified 5.8 years ago by James Taylor ♦ 470 • written 5.8 years ago by Shun Liang • 40
0
gravatar for James Taylor
5.8 years ago by
James Taylor ♦ 470
United States
James Taylor ♦ 470 wrote:
You are definitely in uncharted territory with an arm server. Can you try building just bx-python itself and let us know what the errors are? -- James Taylor, Assistant Professor, Biology/CS, Emory University
ADD COMMENT • link written 5.8 years ago by James Taylor ♦ 470
Sorry just forgot to CC the mailing list. ________________________________________ Hi James, I followed the manual installation instruction on "https://bitbucket.org/james_taylor/bx-python/wiki/HowToInstall", and surprisingly, bx-python seems to be built on the ARM server without any problem: Installed /nfs/users/bx-python/lib/python/bx_python-0.7.1-py2.7-linux- armv7l.egg Processing dependencies for bx-python==0.7.1 Finished processing dependencies for bx-python==0.7.1 Regards, Shun ________________________________________ To: Shun Liang Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Installing Galaxy on ARM Architecture You are definitely in uncharted territory with an arm server. Can you try building just bx-python itself and let us know what the errors are? -- James Taylor, Assistant Professor, Biology/CS, Emory University
ADD REPLY • link written 5.8 years ago by Shun Liang • 40
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