Pulsar Error on Windows

Question: Pulsar Error on Windows

3.7 years ago by

United States

bornea27 • 20 wrote:

I am attempting to run pulsar on a windows machine which I have successfully accomplished on other windows 7 machines but for some reason every time I try to run "paster serve server.ini" I get:

Traceback (most recent call last):
File "C:\Python27\Scripts\paster-script.py", line 9, in <module>
load_entry_point('pastescript==1.7.5', 'console_scripts', 'paster')()
File "C:\Python27\lib\site-packages\pastescript-1.7.5-py2.7.egg\paste\script\c
ommand.py", line 93, in run
commands = get_commands()
File "C:\Python27\lib\site-packages\pastescript-1.7.5-py2.7.egg\paste\script\c
ommand.py", line 135, in get_commands
plugins = pluginlib.resolve_plugins(plugins)
File "C:\Python27\lib\site-packages\pastescript-1.7.5-py2.7.egg\paste\script\p
luginlib.py", line 82, in resolve_plugins
pkg_resources.require(plugin)
File "build\bdist.win-amd64\egg\pkg_resources\__init__.py", line 920, in requi
re
File "build\bdist.win-amd64\egg\pkg_resources\__init__.py", line 788, in resol
ve
File "build\bdist.win-amd64\egg\pkg_resources\__init__.py", line 2915, in __co
ntains__
File "build\bdist.win-amd64\egg\pkg_resources\__init__.py", line 2528, in vers
ion
ValueError: ("Missing 'Version:' header and/or PKG-INFO file", wsgi-path [unknow
n version] (c:\pulsar-master))

I have attempted to find information on this in the paste documentation and stack exchange but I cannot figure out the source of the error. I am running python 2.7.9 and installed the dependencies using the:

easy_install paste wsgiutils PasteScript PasteDeploy webob six psutil

as stated in the pulsar documentation. Any help would be greatly appreciated.

galaxy • 1.6k views

ADD COMMENT • link •

modified 3.7 years ago by jmchilton ♦ 1.1k • written 3.7 years ago by bornea27 • 20

3.7 years ago by

jmchilton ♦ 1.1k

United States

jmchilton ♦ 1.1k wrote:

Can you revert to an older verison of pulsar - specifically "git checkout 47a9ea28ac61837041d8e802d2df7c441055d6b0". This commit (https://github.com/galaxyproject/pulsar/commit/d05588f6ceab9e3fbc3d8d1e81e2967995a2500c) probably broke something but was fine in my testing.

I have created an issue for this problem here - https://github.com/galaxyproject/pulsar/issues/59.

If you make progress after that checkout it would give my a strong indication that commit broke something.

ADD COMMENT • link written 3.7 years ago by jmchilton ♦ 1.1k

Unfortunately that did not work I used the commit you recommend but when I went to run it I got the same error. I also have the results of the tester that is provided with pulsar which also gives this error:

Traceback (most recent call last):
File "C:\pulsar-master\pulsar\client\test\check.py", line 171, in run
submit_job(client, job_description)
File "C:\pulsar-master\pulsar\client\staging\up.py", line 22, in submit_job
file_stager = FileStager(client, client_job_description, job_config)
File "C:\pulsar-master\pulsar\client\staging\up.py", line 82, in __init__
self.__handle_setup(job_config)
File "C:\pulsar-master\pulsar\client\staging\up.py", line 107, in __handle_set
up
job_config = self.client.setup(self.tool_id, self.tool_version)
File "C:\pulsar-master\pulsar\client\client.py", line 68, in setup
return self.setup_handler.setup(**setup_args)
File "C:\pulsar-master\pulsar\client\setup_handler.py", line 65, in setup
return self.client.remote_setup(**setup_args)
File "C:\pulsar-master\pulsar\client\decorators.py", line 12, in replacement
response = func(*args, **kwargs)
File "C:\pulsar-master\pulsar\client\client.py", line 160, in remote_setup
return self._raw_execute("setup", setup_args)
File "C:\pulsar-master\pulsar\client\client.py", line 203, in _raw_execute
return self.job_manager_interface.execute(command, args, data, input_path, o
utput_path)
File "C:\pulsar-master\pulsar\client\interface.py", line 99, in execute
response = self.transport.execute(url, method=method, data=data, input_path=
input_path, output_path=output_path)
File "C:\pulsar-master\pulsar\client\transport\standard.py", line 34, in execu
te
response = self._url_open(request, data)
File "C:\pulsar-master\pulsar\client\transport\standard.py", line 20, in _url_
open
return urlopen(request, data)
File "C:\Python27\lib\urllib2.py", line 154, in urlopen
return opener.open(url, data, timeout)
File "C:\Python27\lib\urllib2.py", line 431, in open
response = self._open(req, data)
File "C:\Python27\lib\urllib2.py", line 449, in _open
'_open', req)
File "C:\Python27\lib\urllib2.py", line 409, in _call_chain
result = func(*args)
File "C:\Python27\lib\urllib2.py", line 1227, in http_open
return self.do_open(httplib.HTTPConnection, req)
File "C:\Python27\lib\urllib2.py", line 1197, in do_open
raise URLError(err)
URLError: <urlopen error [Errno 10061] No connection could be made because the t
arget machine actively refused it>
Traceback (most recent call last):
File "run_client_tests.py", line 4, in <module>
main()
File "C:\pulsar-master\pulsar\client\test\check.py", line 374, in main
run(options)
File "C:\pulsar-master\pulsar\client\test\check.py", line 171, in run
submit_job(client, job_description)
File "C:\pulsar-master\pulsar\client\staging\up.py", line 22, in submit_job
file_stager = FileStager(client, client_job_description, job_config)
File "C:\pulsar-master\pulsar\client\staging\up.py", line 82, in __init__
self.__handle_setup(job_config)
File "C:\pulsar-master\pulsar\client\staging\up.py", line 107, in __handle_set
up
job_config = self.client.setup(self.tool_id, self.tool_version)
File "C:\pulsar-master\pulsar\client\client.py", line 68, in setup
return self.setup_handler.setup(**setup_args)
File "C:\pulsar-master\pulsar\client\setup_handler.py", line 65, in setup
return self.client.remote_setup(**setup_args)
File "C:\pulsar-master\pulsar\client\decorators.py", line 12, in replacement
response = func(*args, **kwargs)
File "C:\pulsar-master\pulsar\client\client.py", line 160, in remote_setup
return self._raw_execute("setup", setup_args)
File "C:\pulsar-master\pulsar\client\client.py", line 203, in _raw_execute
return self.job_manager_interface.execute(command, args, data, input_path, o
utput_path)
File "C:\pulsar-master\pulsar\client\interface.py", line 99, in execute
response = self.transport.execute(url, method=method, data=data, input_path=
input_path, output_path=output_path)
File "C:\pulsar-master\pulsar\client\transport\standard.py", line 34, in execu
te
response = self._url_open(request, data)
File "C:\pulsar-master\pulsar\client\transport\standard.py", line 20, in _url_
open
return urlopen(request, data)
File "C:\Python27\lib\urllib2.py", line 154, in urlopen
return opener.open(url, data, timeout)
File "C:\Python27\lib\urllib2.py", line 431, in open
response = self._open(req, data)
File "C:\Python27\lib\urllib2.py", line 449, in _open
'_open', req)
File "C:\Python27\lib\urllib2.py", line 409, in _call_chain
result = func(*args)
File "C:\Python27\lib\urllib2.py", line 1227, in http_open
return self.do_open(httplib.HTTPConnection, req)
File "C:\Python27\lib\urllib2.py", line 1197, in do_open
raise URLError(err)
urllib2.URLError: <urlopen error [Errno 10061] No connection could be made becau
se the target machine actively refused it>

Looking at this maybe there is something wrong with the network configuration the pc is on large research facility domain as well.

ADD REPLY • link written 3.7 years ago by bornea27 • 20

So I went back even further to the commit from 2/14/15 specifically this (https://github.com/galaxyproject/pulsar/commit/53b81ebb00e8834b3a688f087a9c2ff0d9eea402) commit and it worked. Hopefully this helps troubleshooting and thank you for pointing me in the right direction.

ADD REPLY • link written 3.7 years ago by bornea27 • 20

I believe this should now be fixed with Pulsar - https://github.com/galaxyproject/pulsar/commit/601972d36e871d8f72e8688f9b2a40f134e8ffac. Thanks again for reporting the issue and sorry about the bug.

ADD REPLY • link written 3.6 years ago by jmchilton ♦ 1.1k

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