Question: Problem Starting Galaxy On Cygwin
0
Oren Livne • 130 wrote:
Dear All,
There are related posts but it is unclear from them how to resolve the
following. I'm trying to start a Galaxy server on Cygwin and it fails
when trying to fetch an egg relying on NumPy. Could you kindly advise
how to resolve the error?
This uses the Cygwin python 2.6.5. I tried to point Cygwin to the
Windows python (2.7.2 in my case) but that was even worse, the Mako
egg
threw a KeyError: 'Mako' exception up front.
Thank you so much,
Oren
$ python --version
Python 2.6.5
oren@oren-PC /cygdrive/c/web/galaxy-central
$ sh run.sh --reload
Some eggs are out of date, attempting to fetch...
Fetched http://eggs.g2.bx.psu.edu/Mako/Mako-0.4.1-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/Babel/Babel-0.9.4-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/Whoosh/Whoosh-0.3.18-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/Tempita/Tempita-0.1-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/lrucache/lrucache-0.2-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/NoseHTML/NoseHTML-0.4.1-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/pexpect/pexpect-2.4-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/amqplib/amqplib-0.6.1-py2.6.egg
Fetched
http://eggs.g2.bx.psu.edu/PasteDeploy/PasteDeploy-1.3.3-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/WebHelpers/WebHelpers-0.2-py2.6.egg
Fetched http://eggs.g2.bx.psu.edu/docutils/docutils-0.7-py2.6.egg
Traceback (most recent call last):
File "./scripts/fetch_eggs.py", line 30, in <module>
c.resolve() # Only fetch eggs required by the config
File "/cygdrive/c/web/galaxy-central/lib/galaxy/eggs/__init__.py",
line 345, i
n resolve
egg.resolve()
File "/cygdrive/c/web/galaxy-central/lib/galaxy/eggs/__init__.py",
line 195, i
n resolve
return self.version_conflict( e.args[0], e.args[1] )
File "/cygdrive/c/web/galaxy-central/lib/galaxy/eggs/__init__.py",
line 226, i
n version_conflict
r = pkg_resources.working_set.resolve( ( dist.as_requirement(),
),
env, egg.
fetch )
File "/cygdrive/c/web/galaxy-central/lib/pkg_resources.py", line
565,
in resol
ve
raise DistributionNotFound(req) # XXX put more info here
pkg_resources.DistributionNotFound: numpy==1.6.0
Fetch failed.