I created a custom Galaxy implementation given the following instructions: https://galaxyproject.org/cloudman/
I am receiving 403 forbidden errors when navigating to Get Data > Upload File > fastq > Homo sapiens > paste in the textbox something resembling this URL: https://s3.amazonaws.com/example-bucket/fastq/example-read1.fastq
Per this discussion below, I edited my bucket_default environment variable in the user-data, and validated that my user has full s3 access in AWS IAM: https://biostar.usegalaxy.org/p/13099/
I've tried logging in as admin at https://galaxy.example.com/cloud as well as subscribing and logging in as an individual with my email. Neither approach worked as expected and cleared the 403 error. I tried making it s3://example-bucket/fastq/example-read1.fastq however it just uploads this as text.
Is there something obvious I am missing? Is there any documentation for how to access this file, perhaps it explains how to pass AWS credentials?
Thank you, Blayze
Thank you for the insight as this seems to highlight the root cause. However, I am not going to make my organization's PHI publicly accessible.
You may want to look into generating a pre-signed download URL for those particular datasets as an alternative to making them public