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  Hi, The job is waiting to run for 2 days. What should I do? I'm using STAR and I wonder if my jo...
• Cuffcompare Inputs
  Dear all, given 3 samples, 1 control and 2 treated replicates when I do cuffcompare to produce th...
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  Hi, I'm trying use the tools to mapping my sequence but since 2 day ago my job is on queue. Anyo...
• Jobs starting to run and then stopping
  Hi, Recently I have been using Galaxy to run Cufflinks but I have been having problems where a j...
• Cufflink Workflow
  Hi, I want to compare gene deferentially expressed in two conditions (1 and 2). I don't have a GT...
• Galaxy Cloud @ AWS: how to use tophat2 multi-threaded?
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  Hi all, I've recently received the .fastq files for my rna-seq experiment. According to the sequ...
• HG38 .gtf file
  Hello. For practise, I am running an RNA-seq analysis on some of the RNA-seq data from Illumina ...
• This job is waiting to run
  Dear Madam/Sir, I am using your Galaxy service and I have a problem. I need to do 3 steps for my...
• Cuffdiff
  Dear All I have simple and question for cuffdiff should we run cuffdif on merge transcript file (...
• why Tophat very very slow on the galaxy project last 2 days?
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• cufflinks in Galaxy
  Hi, Recently, I tried to use cufflinks in Galaxy. However, it is running several days and never ...
• Is galaxy still working?
  I have some problems for running galaxy tools (tophat, cuffdif,..), while I am under the quota (u...
• Bowtie 2 output read
  I am using galaxy platform to run Bowtie 2. I have illumina paired end reads (file#1 and file#2)...
• MACS2 bdgdiff gives empty results in galaxy, what to do?
  Hi all, I am trying to generate differential peaks of 2 sets of ChIP-seq experiments: cells trea...
• Docker Galaxy Job conf file and SLURM
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