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• fastq convert problem
  Hi. I have a problem using my data on galaxy for proces radtags. First I had to trim my raw data ...
• Selecting Reads At Random From Fastq File
  Hi, I am curious if anyone knows how to select random lines from a fastq file. There is a select...
• how to do FTP upload
  How can I upload the files to FTP server of Galaxy? I need to align two fastq files, which are 7 ...
• Galaxy -- use of MinION data to convert FastQ to FastA
  Hello, I have FastQ data from the MinION and I am having troubles converting these FastQ files to...
• Uploading multiple FastQ files from BaseSpace to Galaxy
  Hi, Hoping someone can help. I have a run that recently completed on our Illumina MiSeq and the ...
• How to generate consensus sequence from a sorted and aligned to ref BAM file?
  Hello guys, I was trying to convert my 2 paired end fastq files to aligned sorted bam and I was s...
• Concatenate fastq files in galaxy
  Hi, I have several fastq files that I want to merge. can anybody share how to concatenate multipl...
• Transformation Fastq Files
  Hi there, I am not quite sure if Galaxy can help me but I am looking for way to transform a fast...
• Fastq format to final format
  Hi I used the galaxy to remove sequence debris and sequencing primers, as well as exclude small ...
• Upload fastq to 'Data Libraries' Using Bioblend Python library
  Hello , I am a Developer from INDIA , I am using the galaxy API to create a library,upload fast f...
• Local Galaxy. Trimmomatic does not see fastq files.
  Hello, I am new at Galaxy and trying to use it both local and in server. I downloaded some tools ...
• Which Galaxy tool can concatenate fastq files from different lanes of flow-cell?
  Which tool on Galaxy can I use to merge my fastq files from lanes 1,2,3, and 4 of a single librar...
• Help! I'm using trimmomatic in Galaxy, but it doesn't recognize a part of input dataset.
  I'm using Trimmomatic to trimming paired end reads. When I set "Single-end or paired-end reads?"...
• Decompressing files on local galaxy
  HI, I am using local instance of Galaxy. I have uploaded my dataset and they are in fastq.gz fo...
• Combining The Paired Reads From Illumina Run
  Hi, I have two fastq files with the forward(/1) and reverse(/2) paired reads. The reads are not ...
• Fastq File Generated By Samtools Can'T Be Recognized
  Good day. I'm trying to use Galaxy's FASTQ to FASTA converter. However, the fastq file I generat...
• FASTQ to viewer to variant calling
  Hello, I am new bioinformatics and am trying to teach myself how to do some basics. I have FAST...
• uploading fastq in galaxy
  sorry guys, i am in ribo-galaxy now,i created account already...in get data part no option to up...
• FASTQ to viewer to variant calling
  Hello, I am new bioinformatics and am trying to teach myself how to do some basics. I have FAST...
• fastq-dump on Galaxy?
  Hello, I'm just getting my hands on Galaxy. I imported local .sra files as my starting data, but...
• Transfer FASTQ data from external resource to Galaxy
  Dear all Please how can I transfer a FASTQ file directly from Illumina basespace to Galaxy? Thank...
• TopHat RNA-Seq FASTQ file not seen
  Hey, I'm trying to use Galaxy to process my RNA-seq data. I have uploaded the fastq file to gal...
• Is my fastq file broken
  Hi Biostar My question is when I uploaded my fastq file to galaxy, it can not go to groom. Norma...
• Do not want fastq.gz file to be unziped by galaxy automatically.
  Hi  I am developing one wrapper for my local galaxy server. My tools take fastq.gz format as inp...
• Extraction of compressed dataset?
  Hi, I'm trying to analyze the RNAseq dataset I've uploaded on Galaxy but it is not identified as...