I am developing one wrapper for my local galaxy server. My tools take fastq.gz format as input and run on shell script and give out put.
But in galaxy whenever i am using fastq.gz file ,galaxy convert it into fastq format automatically.So my tool does not find a input as fastq.gz.
I do not want any change in fastq.gz so that it can be taken directly as such by tool .
Please help if there is any solution for it .