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Question: Is my fastq file broken
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gravatar for youyouzh
4.3 years ago by
youyouzh • 10
United States
youyouzh • 10 wrote:

Hi Biostar

My question is when I uploaded my fastq file to galaxy, it can not go to groom. Normal file is supposed to end with .fastq after complete uploading, but these files are ended with fastq.gz, showing empty. The weird thing is that these files were analyzed one week ago and everything was normal at that time. I was worried about my other fastq files. Can anyone help me with this problem. Thanks a lot.

Youyou
rna-seq • 920 views
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modified 4.3 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.3 years ago by youyouzh • 10
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gravatar for Jennifer Hillman Jackson
4.3 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Uploaded files compressed in .gz format should uncompress automatically into datasets. The name (label) of the files doesn't matter, but "datatype" does, and the empty dataset indicates a problem. I am not sure where you are working (which instance) or how the data is being loaded and by which tool (FTP, URL, or other means). But these are the general paths for user upload in standard instances: 
http://wiki.galaxyproject.org/Support#Loading_data

Please share more details if you continue to have problems after reviewing and following guidelines.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 4.3 years ago by Jennifer Hillman Jackson ♦ 25k
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