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Question: Adding a genome to Galaxy
0
gravatar for Dominique.Sanglard
3.9 years ago by
Dominique.Sanglard • 10
Switzerland
Dominique.Sanglard • 10 wrote:

Is it possible to add a novel genome in the list of genomes to map illumina reads ?
assembly • 1.5k views
ADD COMMENT • link •
modified 3.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.9 years ago by Dominique.Sanglard • 10
1
gravatar for Jennifer Hillman Jackson
3.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

For all users that want to work with a genome not available in the built-in genome indexes for a tool.

The solution is to use a Custom Reference Genome. No wait & you control the content.

https://wiki.galaxyproject.org/Support#Custom_reference_genome

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for amit.cgd
3.9 years ago by
amit.cgd • 0
India
amit.cgd • 0 wrote:

I think.... we can not... but we can upload our own set of genome is Fasta format for further workflow.
ADD COMMENT • link written 3.9 years ago by amit.cgd • 0
1

According to the Galaxy site, you need to upload a genome via the Galaxy team. YOU cannot do that by yourself.

ADD REPLY • link written 3.9 years ago by Dominique.Sanglard • 10
1

Loading your own genome is definitely possible. Then it can be used for all analysis plus a custom data browser. This is a unique feature of Galaxy: https://wiki.galaxyproject.org/Support#Custom_reference_genome

ADD REPLY • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for hualong.qiu
3.0 years ago by
hualong.qiu • 0
hualong.qiu • 0 wrote:

So how can I contact the team to add the genome that i need. Thanks a lot.
ADD COMMENT • link written 3.0 years ago by hualong.qiu • 0

Use your target genome as a custom reference genome. Here is how: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Thanks, Jen, Galaxy team

ADD REPLY • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k

Thanks a lot.

ADD REPLY • link written 3.0 years ago by hualong.qiu • 0
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