Similar posts • Search »

• Zebrafish Genome on HISAT2
  Hello, The reference genome for zebrafish (D. Rerio) is missing from Hisat2. Could this be added...
• built-in genome for HISAT2 not available
  I am trying to map fastq to mm9 genome using HISAT2. But the drop-down list of built-in genomes i...
• Tophat2 (Version 0.6)
  Is there any chance to have the Arabidopsis genome put in the sliding menu of the Tophat2 (versio...
• HISAT2 reference genome unobtainable
  Trying to use HISAT2 - no reference genomes are available, how should I report this? Many thanks,...
• will you please add some plant genomes
  will you please add some plant genomes, like Arabidopsis, Tomato, Potato, Rice, Citrus, thanks (I...
• Arabidopsis Genome
  Dear all, I was wandering if you plan to incorporate "get data" from arabidopsis TAIR DB? Thanks...
• No reference genomes on galaxy hisat2
  I am trying to do rnaseq analysis but galaxy doesn't seem to have any reference genomes on hisat2...
• Add reference genome
  Hi, Is it possible to add Arabdiopsis as reference genome to the build in set for the hisat2 pro...
• genome mappability and peak calling
  I am working with a brassica plant that it is not the model Arabidopsis thaliana. How important i...
• Arabidopsis Tair9 Genome In Galaxy?
  Hello, Please the TAIR9 genome to Galaxy next-gen tools for use with BowTie. I made a "fasta" f...
• Galaxy And Arabidopsis
  Dear All, Is it possible (and how) for Galaxy to work with Arabidopsis genome? Vesko -- Dr. V...
• HiSat2- over 50% of reads failed to align
  Hello, I am using Hisat2 to align reads to a reference genome (mm10). However, over 50% of read...
• Arabidopsis Thaliana Genome
  Dear Galaxy team! Could you put the Arabidopsis thaliana genome in the drop down list? What kind...
• HiSAT2 alignment to GRCm38? in Galaxy -- where to find mm10 reference annotation
  I am doing an RNA-seq experiment and I ran HiSAT2 with the mm10 reference genome. Then in order t...
• HISAT2-reference genome not available in a local -- data must be installed first
  Hi everyone, When I'm trying to use in my local galaxy HISAT2 for mapping the reads I have an inf...
• Which reference to map against for RNA-Seq using HISAT2
  Hi all, I am trying to determine differential expression between two test conditions - in rat. T...
• Problems loading/using custom genome dataset for Hisat analysis
  Hi, I am trying to load from ENA the genome dataset of Carnegiea gigantea into HiSAT2 analysis f...
• Genome Database/Builds Missing?
  I've been using galaxy to analyze maf files and today the drop down list for database/builds for ...
• Cannot select the S. cerevisiae reference genome (sacCer3) for "Map with Bowtie for Illumina" in a saved workflow
  I have a saved workflow involving a Map with Bowtie for Illumina step in which I want to map read...
• STAR parameters in plants genomes
  Dear all, I want to use the STAR alignment tool available in usegalaxy.org, i know that the defau...
• Genome Of Interest Is Not Listed
  Dear Sir/Maam I am using Galaxy for analysis of NGS data. I want to map the NGS data, but the ge...