Question: How do you load GEO data into Galaxy
gravatar for einstr
4.1 years ago by
United States
einstr20 wrote:

how do i load files from GEO? these are compressed files of either SRA or TAR files.

rna-seq • 2.3k views
ADD COMMENTlink modified 3.8 years ago by Martin Čech ♦♦ 4.9k • written 4.1 years ago by einstr20

Can you give us some example of such data? Link?

ADD REPLYlink written 4.1 years ago by Martin Čech ♦♦ 4.9k
gravatar for Jennifer Hillman Jackson
4.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Please try the tool "Get Data: EBI SRA". Search for GEO and locate the experiment. Sequence data per experiment can be loaded directly from a link under the table heading "Galaxy".

Best, Jen, Galaxy team

ADD COMMENTlink written 4.1 years ago by Jennifer Hillman Jackson25k

I understand that Get Data: EBI SRA works for getting SRA information, as ENA mirrors NCBI's SRA. However, GEO data (e.g. microarray data) is not accessible from EBI... Suggestions?

ADD REPLYlink written 3.5 years ago by mrals8950
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour