Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Downloading files from ENA problems
0
gravatar for trevor.blain
11 weeks ago by
trevor.blain • 10
trevor.blain • 10 wrote:

I am using the European Nucleotide Archive in order to load the fastq files into galaxy. When the job is done running and turns green, there is nothing in the file... Just says 0 lines file: txt. It was working fine from the same Geo accession data early today.
software error galaxy • 117 views
ADD COMMENT • link •
modified 11 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 11 weeks ago by trevor.blain • 10
0
gravatar for Jennifer Hillman Jackson
11 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The ENA server is probably busy. Expand the dataset and it will probably note something about this in the comments.

There is a known issue with the datatype assigned to data when retrieving it into Galaxy using the "Send to Galaxy" link. It needs to be modified, how to is explained in this post: https://biostar.usegalaxy.org/p/28718/. We plan to fix the tool near-term.

So, be sure to change the datatype on any data downloaded using that method. Alternatives are in the other post.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 11 weeks ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 176 users visited in the last hour