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• Selecting Reads At Random From Fastq File
  Hi, I am curious if anyone knows how to select random lines from a fastq file. There is a select...
• Rank aptamers by relative frequency
  I have the result (fastq file) of the sequencing of DNA aptamers, selected using the SELEX method...
• Pair end alignment using HISAT2
  Hi, I have a FASTQ file that is a paired library. I want to align this FASTq file to Hg19 genome...
• FASTAQ not able to be selected in BWA, though FastaQC passed
  I need some help. I am trying to map two fastq datasets with Bwa-mem. If I design a workflow by...
• list collection output - format set from input
  I have an input, that can be fasta,fastqsanger,fastqillumina: <param name="fastq_input1" typ...
• HOW can select MAF <0,01 in a VCF files without use ANNOVAR?
  HOW can select variations with MAF &lt;0,01 in a VCF files without use ANNOVAR? I have problem wi...
• <filter> Tags not working for nested conditionals.
  Hi! I have written a tool that lets the user deside what to do, and depending on those decisions ...
• Transfer FASTQ data from external resource to Galaxy
  Dear all Please how can I transfer a FASTQ file directly from Illumina basespace to Galaxy? Thank...
• from_work_dir tags not working in Galaxy output
  Hi,   I've got a problem and I hope you know what I am doing wrong. I'm running/coding a tool t...
• Workflow cannot run - Admin: older issue, see 25048 for current
  I chose an uploaded workflow and clicked "Run workflow" on a selected input fastq file. A green b...
• FASTQ Joiner or Interlacer problem
  Hello everyone, I am trying to use the FASTQ interlacer or joiner on my pair end read files. Aft...
• FASTQ quality trimmer
  I had a mutant and wild type FASTQ data of a mutant yeast strain. How can I perform FASTQ quality...
• tag <filter> output with select box galaxy
  Hi everybody, i want to know if it is possible to use the &lt;filter&gt; tag for output from typ...
• galaxy biomina RSeQC bam/sam mapping stats error
  I am trying to run the Galaxy Biomina RseQC BAM/SAM mapping quality stats I have selected my upl...
• fastq to bam
  Hi, I am a newbie in these bioinformatics tools. I have 42 x 2 (paired end) fastq files that got...
• How to share a data library with other users
  I'm having some trouble allowing other users of my galaxy to see the files in the data library I ...
• running of the files after uploading
  Hi... I am unable to run the files after uploading. The uploading is done but on the left side on...
• Re: Fastq To Fasta Tool
  Hi Omri, Thanks for reporting this issue. There were two different FASTQ to FASTA tools loaded ...
• Making a Temporary Directory in an XML File
  Hi all. I'm making a custom bowtie tool, because the current bowtie tool only accepts FASTQ files...
• Mosaik With Paired Reads
  Hello, I'm trying to run Mosaik on our galaxy instance on Ilumina paired reads. However when I se...
• can't load Fastq file
  Hi all,   I would use BWA tool but when I try to add  the fastq file by click on the menu below...
• Select FASTQ reads by sequence
  Which tool should I use to select all reads from a FASTQ file which include any of about 100 shor...