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Question: Queue to run
0
gravatar for michelfarah
4.2 years ago by
michelfarah • 0
Brazil
michelfarah • 0 wrote:

Hi,

I'm trying use the tools to mapping my sequence but since 2 day ago my job is on queue. Anyone know what is happening? 

Thanks!

Michel Farah
queue job dataset • 1.1k views
ADD COMMENT • link •
modified 4.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.2 years ago by michelfarah • 0

Ok! I will try!

Thanks.

 

ADD REPLY • link written 4.2 years ago by michelfarah • 0
5
gravatar for Guilherme Dias
4.2 years ago by
Guilherme Dias • 110
Brazil
Guilherme Dias • 110 wrote:

Hey Michel, the NGS mapping tools (and others) consume significant computational resources and will have to wait on the line to be executed because there are separate nodes reserved for them. So, 2 days is normal in my own experience.

One thing you can do is to click on the option "Job Resource Parameters" which is located at the end of the form (in Bowtie, Bowtie2, Lastz...). Then change it to "Specify Job Resource Parameters", and after the page refreshes you just change from "Galaxy cluster (default)" to the "TACC Stampede test/development (beta)" and run the job again. I just did this running the same job both on the Galaxy cluster and on Stampede and the later finishes significantly faster. This is because the Stampede cluster is more powerful so, give it a try. o/
ADD COMMENT • link modified 4.2 years ago • written 4.2 years ago by Guilherme Dias • 110
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